Abstract. The magnitude of carbon (C) loss to the atmosphere via microbial
decomposition is a function of the amount of C stored in soils, the quality
of the organic matter, and physical, chemical, and biological factors that
comprise the environment for decomposition. The decomposability of C is
commonly assessed by laboratory soil incubation studies that measure
greenhouse gases mineralized from soils under controlled conditions. Here,
we introduce the Soil Incubation Database (SIDb) version 1.0, a compilation
of time series data from incubations, structured into a new, publicly
available, open-access database of C flux (carbon dioxide, CO2, or
methane, CH4). In addition, the SIDb project also provides a platform
for the development of tools for reading and analysis of incubation data as
well as documentation for future use and development. In addition to
introducing SIDb, we provide reporting guidance for database entry and the
required variables that incubation studies need at minimum to be included in
SIDb. A key application of this synthesis effort is to better characterize
soil C processes in Earth system models, which will in turn reduce our
uncertainty in predicting the response of soil C decomposition to a changing
climate. We demonstrate a framework to fit curves to a number of incubation
studies from diverse ecosystems, depths, and organic matter content using a
built-in model development module that integrates SIDb with the existing
SoilR package to estimate soil C pools from time series data. The database
will help bridge the gap between point location measurements, which are
commonly used in incubation studies, and global remote-sensed data or data
products derived from models aimed at assessing global-scale rates of
decomposition and C turnover. The SIDb version 1.0 is archived and publicly
available at https://doi.org/10.5281/zenodo.3871263 (Sierra et al., 2020), and the database is managed
under a version-controlled system and centrally stored in GitHub (https://github.com/SoilBGC-Datashare/sidb, last access: 26 June 2020).
