"DFG-flip" in the insulin receptor kinase is facilitated by a helical intermediate state of the activation loop.

Academic Article

Abstract

  • We have characterized a large-scale inactive-to-active conformational change in the activation-loop of the insulin receptor kinase domain at the atomistic level via untargeted temperature-accelerated molecular dynamics (TAMD) and free-energy calculations using the string method. TAMD simulations consistently show folding of the A-loop into a helical conformation followed by unfolding to an active conformation, causing the highly conserved DFG-motif (Asp(1150), Phe(1151), and Gly(1152)) to switch from the inactive "D-out/F-in" to the nucleotide-binding-competent "D-in/F-out" conformation. The minimum free-energy path computed from the string method preserves these helical intermediates along the inactive-to-active path, and the thermodynamic free-energy differences are consistent with previous work on various other kinases. The mechanisms revealed by TAMD also suggest that the regulatory spine can be dynamically assembled/disassembled either by DFG-flip or by movement of the αC-helix. Together, these findings both broaden our understanding of kinase activation and point to intermediates as specific therapeutic targets.
  • Authors

  • Vashisth, Harish
  • Maragliano, Luca
  • Abrams, Cameron F
  • Status

    Publication Date

  • April 18, 2012
  • Published In

    Keywords

  • Amino Acid Motifs
  • Enzyme Activation
  • Molecular Dynamics Simulation
  • Protein-Serine-Threonine Kinases
  • Receptor, Insulin
  • Solvents
  • Temperature
  • Thermodynamics
  • Tyrosine
  • Digital Object Identifier (doi)

    Start Page

  • 1979
  • End Page

  • 1987
  • Volume

  • 102
  • Issue

  • 8